Publications (international journals or monographs)

BOWLING D. R., SCHÄDEL C., SMITH K. R., RICHARDSON A. D., BAHN M., ARAIN M. A., … BLACK T. A. (2024): Winter-Dormant Temperate and Boreal Forests: Long-Term Observations From Flux Towers and Quantitative Evaluation of Phenology Models. Journal of Geophysical Research: Biogeosciences, 129(5). [Available online ].

KOVÁČ D., NOVOTNÝ J., ŠIGUT L., GRACE J., URBAN O. (2023): Dynamic of Fluorescence Emissions at O2A and O2B Telluric Absorption Bands in Forested Areas with Seasonal APAR and GPP Variations. Remote Sensing, 15(1).  [Available online ].

GOMARASCA U., MIGLIAVACCA M., KATTGE J., NELSON J. A., NIINEMETS Ü., WIRTH C., … REICHSTEIN M. (2023): Leaf-level coordination principles propagate to the ecosystem scale. Nature Communications, 14(1), 1–11. [Available online ].

XIE M., MA X., WANG Y., LI C., SHI H., YUAN X., … LUO G. (2023): Monitoring of carbon-water fluxes at Eurasian meteorological stations using random forest and remote sensing. Scientific Data, 10(1), 587. [Available online ].

GRAF A., WOHLFAHRT G., ARANDA-BARRANCO S., ARRIGA N., BRÜMMER C., CESCHIA E., … VEREECKEN H. (2023): Joint optimization of land carbon uptake and albedo can help achieve moderate instantaneous and long-term cooling effects. Communications Earth and Environment, 4(1), 1–12. [Available online ].

TANG A. C. I., FLECHARD C. R., ARRIGA N., PAPALE D., STOY P. C., BUCHMANN N., … LOUSTAU D. (2023): Detection and attribution of an anomaly in terrestrial photosynthesis in Europe during the COVID-19 lockdown. Science of the Total Environment, 903.  [Available online ].

KOVÁČ D., NOVOTNÝ J., ŠIGUT L., AČ A., PEÑUELAS J., GRACE J., URBAN O. (2023): Estimation of photosynthetic dynamics in forests from daily measured fluorescence and PRI data with adjustment for canopy shadow fraction. Science of the Total Environment, 898. [Available online ].

BAO S., WUTZLER T., KOIRALA S., CUNTZ M., IBROM A., BESNARD S., … CARVALHAIS N. (2022): Environment-sensitivity functions for gross primary productivity in light use efficiency models. Agricultural and Forest Meteorology, 312. [Available online ].

FU Z., CIAIS P., MAKOWSKI D., BASTOS A., STOY P. C., IBROM A., … WIGNERON J. P. (2022): Uncovering the critical soil moisture thresholds of plant water stress for European ecosystems. Global Change Biology, 28(6), 2111–2123. [Available online ].

KOVÁČ D., AČ A., ŠIGUT L., PEÑUELAS J., GRACE J., URBAN O. (2022): Combining NDVI, PRI and the quantum yield of solar-induced fluorescence improves estimations of carbon fluxes in deciduous and evergreen forests. Science of the Total Environment, 829.  [Available online ].

JIANG N., SHEN M., CIAIS P., CAMPIOLI M., PEÑUELAS J., KÖRNER C., … ZHAO W. (2022): Warming does not delay the start of autumnal leaf coloration but slows its progress rate. Global Ecology and Biogeography, 31(11), 2297–2313.  [Available online ].

MENSAH C., ŠIGUT L., FISCHER M., FOLTÝNOVÁ L., JOCHER G., URBAN O., … MAREK M. V. (2021): Environmental effects on normalized gross primary productivity in beech and Norway spruce forests. Atmosphere, 12(9), 1–25. [Available online ].

MENSAH C., ŠIGUT L., FISCHER M., FOLTÝNOVÁ L., JOCHER G., ACOSTA M., … MAREK M. V. (2021): Assessing the contrasting effects of the exceptional 2015 drought on the carbon dynamics in two norway spruce forest ecosystems. Atmosphere, 12(8), 1–16. [Available online ].

ZHOU H., SHAO J., LIU H., DU Z., ZHOU L., LIU R., … ZHOU X. (2021): Relative importance of climatic variables, soil properties and plant traits to spatial variability in net CO2 exchange across global forests and grasslands. Agricultural and Forest Meteorology, 307, 108506. [Available online ].

LIN S., LI J., LIU Q., GIOLI B., PAUL-LIMOGES E., BUCHMANN N., … YUAN W. (2021): Improved global estimations of gross primary productivity of natural vegetation types by incorporating plant functional type. International Journal of Applied Earth Observation and Geoinformation, 100, 102328. [Available online ].

JOHNSTON A. S. A., MEADE A., ARDÖ J., ARRIGA N., BLACK A., BLANKEN P. D., … VENDITTI C. (2021): Temperature thresholds of ecosystem respiration at a global scale. Nature Ecology & Evolution, 5(4), 487–494. [Available online ].

JOCHER G., KOWALSKA N., ACOSTA M., KREJZA J., MARKOVÁ I., MARSHALL J. D., … MAREK M. V. (2021): Potential of typical highland and mountain forests in the czech republic for climate-smart forestry: Ecosystem-scale drought responses. Canadian Journal of Forest Research, 51(12), 1811–1820. [Available online ].

FU Z., CIAIS P., BASTOS A., STOY P. C., YANG H., GREEN J. K., … KOEBSCH F. (2020): Sensitivity of gross primary productivity to climatic drivers during the summer drought of 2018 in Europe. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1810), 20190747. [Available online ].

GRAF A., KLOSTERHALFEN A., ARRIGA N., BERNHOFER C., BOGENA H., BORNET F., … VEREECKEN H. (2020): Altered energy partitioning across terrestrial ecosystems in the European drought year 2018. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1810), 20190524. [Available online ].

NELSON J. A., PÉREZ‐PRIEGO O., ZHOU S., POYATOS R., ZHANG Y., BLANKEN P. D., … JUNG M. (2020): Ecosystem transpiration and evaporation: Insights from three water flux partitioning methods across FLUXNET sites. Global Change Biology, gcb.15314. [Available online ].

RAJ R., BAYAT B., LUKEŠ P., ŠIGUT L., HOMOLOVÁ L. (2020): Analyzing daily estimation of forest gross primary production based on harmonized landsat-8 and sentinel-2 product using scope process-based model. Remote Sensing, 12(22), 1–23. [Available online ].

FISHER J. B., LEE B., PURDY A. J., HALVERSON G. H., DOHLEN M. B., CAWSE-NICHOLSON K., … HOOK S. (2020): ECOSTRESS: NASA’s Next Generation Mission to Measure Evapotranspiration From the International Space Station. Water Resources Research, 56(4), 1–20. [Available online ].

DARENOVA E., HORÁCEK P., KREJZA J., POKORNÝ R., PAVELKA M. (2020): Seasonally varying relationship between stem respiration, increment and carbon allocation of Norway spruce trees. Tree Physiology, 40(7), 943–955. [Available online ].

PASTORELLO G., TROTTA C., CANFORA E., CHU H., CHRISTIANSON D., CHEAH Y.-W., … PAPALE D. (2020): The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data. Scientific Data, 7(1), 225. [Available online ].

LIN H., TU C., FANG J., GIOLI B., LOUBET B., GRUENING C., … GRACE J. (2020): Forests buffer thermal fluctuation better than non-forests. Agricultural and Forest Meteorology, 288–289, 107994. [Available online ].

JOCHER G., FISCHER M., ŠIGUT L., PAVELKA M., SEDLÁK P., KATUL G. (2020): Assessing decoupling of above and below canopy air masses at a Norway spruce stand in complex terrain. Agricultural and Forest Meteorology, 294(August), 108149. [Available online ].

DARENOVA E., SZATNIEWSKA J., ACOSTA M., PAVELKA M. (2019): Variability of stem CO2 efflux response to temperature over the diel period. Tree Physiology, 39(5), 877–887. [Available online ].

PEAUCELLE M., BACOUR C., CIAIS P., VUICHARD N., KUPPEL S., PEÑUELAS J., … VIOVY N. (2019): Covariations between plant functional traits emerge from constraining parameterization of a terrestrial biosphere model. Global Ecology and Biogeography, 28(9). [Available online ].

KRUPKOVA L., MAREK M. V. (2019): Impact of water scarcity on spruce and beech forests. 30, 899–909. [Available online ].

JURÁŇ S., ŠIGUT L., HOLUB P., FARES S., KLEM K., GRACE J., URBAN, O. (2019): Ozone flux and ozone deposition in a mountain spruce forest are modulated by sky conditions. Science of the Total Environment, 672.  [Available online ].

McGloin R., Šigut L., Fischer M., Foltýnová L., Chawla S., Trnka M., Pavelka M., Marek M. V. (2019): Available energy partitioning during drought at two Norway spruce forests and a European beech forest in central Europe. Journal of Geophysical Research: Atmospheres 124: 3726-3742.

WU X., LIU H., LI X., CIAIS P., BABST F., GUO W., … MA Y. (2018): Differentiating drought legacy effects on vegetation growth over the temperate Northern Hemisphere. Global Change Biology, 24(1), 504–516. [Available online ].

McGloin R., Šigut L., Havránková K., Dušek J., Pavelka M., Sedlák P (2018): Energy balance closure at a variety of ecosystems in Central Europe with contrasting topographies. Agricultural and Forest Meteorology 2018(248): 418-431.

Collalti A., Trotta C., Keenan T. F., Ibrom A., Bond-Lamberty B., Grote R., Vicca S., Reyer C. P. O., Migliavacca M., Veroustraete F., Anav A., Campioli M., Scoccimarro E., Sigut L., Grieco E., Cescatti A., Matteucci G. (2018): Thinning Can Reduce Losses in Carbon Use Efficiency and Carbon Stocks in Managed Forests Under Warmer Climat. Journal of Advances in Modeling Earth Systems 10: 2427-2452.

Darenova E., Acosta M., Pokorny R., Pavelka M. (2018): Variability in temperature dependence of stem CO2 efflux from Norway spruce trees. Tree Physiology 38,9: 1333-1344.

Zapletal M., Juran S., Krpes V., Michna K., Edwards-Jonasova M., Cudlin P. (2018): Effect of Ozone Flux on Selected Structural and Antioxidant Characteristics of a Mountain Nor-way Spruce Forest. Baltic Forestry 24,2: 261-267.

Juran S., Pallozzi E., Guidolott, G., Fares S., Sigut L., Calfapietra C., Alivernini A., Savi F.,Vecerova K., Krumal K.,Vecera Z., Urban O. (2017): Fluxes of biogenic volatile organic compounds above temperate Norway spruce forest of the Czech Republic. Agricultural and Forest Meteorology 232: 500-513.

Nezval O., Pavelka M. (2017): Microclimate changes in a spruce stand and meadow ecosystem during a solar eclipse in the Czech Republic. Weather 72(3): 67-72.

Godbold D., Vašutová M., Wilkinson A., Edwards-Jonášová M., Bambrick M., Smith A. R., Pavelka M., Cudlín P. (2015): Elevated Atmospheric CO2 Affects Ectomycorrhizal Species Abundance and Increases Sporocarp Production under Field Conditions. Forests 6: 1256-1273.

Potuznikova K., Sedlak P., Knizova P., Koucka (2015): Detection of low-frequency organized structures in night-time air flow within a spruce canopy on the upwind and downwind sides of a mountain ridge. Atmospheric Science Letters 16,4: 432-437.

Darenova E., Pavelka M., Acosta M. (2014): Diurnal deviations in the relationship between CO2 efflux and temperature: A case study. Catena 123: 263-269.

Kovac D., Malenovsky Z., Urban O., Spunda V., Kalina J., Ac A., Kaplan V., Hanus J. (2013): Response of green reflectance continuum removal index to the xanthophyll de-epoxidation cycle in Norway spruce needles. Journal Of Experimental Botany 64,7: 1817-1827.

Holisova P., Zitova M., Klem K., Urban O. (2012): Effect of Elevated Carbon Dioxide Concentration on Carbon Assimilation under Fluctuating Light. Journal of Environmental Quality 41,6: 1931-1938.

Zapletal M., Pretel J., Chroust P., Cudlin P., Edwards-Jonasova M., Urban O., Pokorny R., Czerny R., Hunova I. (2012): The influence of climate change on stomatal ozone flux to a mountain Norway spruce forest. Environmental Pollution 169:267-273.

Urban O., Klem K., Ac A., Havrankova K., Holisova P., Navratil M., Zitova M., Kozlova K., Pokorny R., Sprtova M., Tomaskova I., Spunda V., Grace J. (2012): Impact of clear and cloudy sky conditions on the vertical distribution of photosynthetic CO2 uptake within a spruce canopy. Functional Ecology 26,1: 46-55.

Ac A., Malenovsky Z., Urban O., Hanus J.,Zitova M., Navratil M., Vrablova M., Olejnickova J., Spunda V., Marek M. (2012): Relation of Chlorophyll Fluorescence Sensitive Reflectance Ratios to Carbon Flux Measurements of Montanne Grassland and Norway Spruce Forest Ecosystems in the Temperate Zone. Scientific World Journal 2012.

Laurent V. C. E., Verhoef W., Clevers J. G. P. W., Schaepman M. E. (2011): Inversion of a coupled canopy-atmosphere model using multi-angular top-of-atmosphere radiance data: A forest case study. Remote Sensing of Environment 115,10: 2603-2612.

Lukes P., Rautiainen M., Stenberg P., Malenovsky Z. (2011): Empirical test of the spectral invariants theory using imaging spectroscopy data from a coniferous forest. International Journal of Applied Earth Observation and Geoinformation 13,4: 668-675.

Sedlak P., Aubinet M., Heinesch B., Janous D., Pavelka M., Potuznikova K., Yernaux M. (2010): Night-time airflow in a forest canopy near a mountain crest. Agricultural and Forest Meteorology 150,5: 736-744.

Pokorny R., Tomaskova I. (2009): Water Release by Norway Spruce Stand during Extreme Humid Conditions. VII International Workshop on Sap Flow 846:309-313.

Pavelka M., Acosta M., Marek M. V., Kutsch W., Janous D. (2007): Dependence of the Q10 values on the depth of the soil temperature measuring point. Plant and Soil 292, 1-2: 171-179.

Vrchotova N., Triska J., Urban O., Peknic L. (2004): Variability of catechin and 4-hydroxyacetophenone distribution in Norway spruce needles in relation to their position, age, and growing conditions. Environmental Pollution 131,1:55-59.

Matejka F., Janous D., Hurtalova, T., Roznovsky J. (2004): Effects of thinning on microclimate of a young spruce forest. Ekologia-Bratislava 23:30-38.

Havrankova K., Sedlak P. (2004): Wind velocity analysis for mountainous site Bily Kriz. Ekologia-Bratislava 23: 46-54.

Pavelka M., Acosta M., Janous D. (2004): A new device for continuous CO2 flux measurement in forest stand. Ekologia-Bratislava 23: 88-100.

Markova I., Roznovsky J., Janous D. (2003): Evaluation and reconstruction of global radiation at Bily Kriz (the Czech Republic). Ekologia-Bratislava 22,1: 85-97.

Tuma I. (2003): A study of the effect of pollution and climate impact on plant growth based on field transplantation - (A phytometer method). Ekologia-Bratislava 22: 253-267.

Markova I., Janous D. (2003): Radiation conditions at Bily Kruz (the Czech Republic) in 2000 and 2001. Ekologia-Bratislava 22,4: 381-393.

Mbuyi M. H. T. (2003): Air pollution at the Bily Kriz mountains in the Czech Republic. International Journal of Environment and Pollution 19,1: 1-10.

Pokorny R., Salanska P., Janous D. (2001): Growth and transpiration of Norway spruce trees under atmosphere with elevated CO2 concentration. Ekologia-Bratislava 20,1: 14-28.

Sustek S. (2001): Comparison of beech (Fagus sylvatica [L.] Mill.) and spruce (Picea abies [L,] Karst.) root biomass in limed and control localities at Bily Kriz in the Beskids. Ekologia-Bratislava 20: 61-78.

Hurtalova T., Janous D., Markova I. (2001): Aerodynamic properties of a young spruce stand. Ekologia-Bratislava 20,3: 310-318.

Fiala K. (2000): Root and rhizome growth of grasses Calamagrostis arundinacea and C-villosa on deforested sites in response to pollution and climatic impacts. Biologia 55,1: 91-98.

Swietlicki E., Krejci R. (1996): Source characterisation of the Central European atmospheric aerosol using multivariate statistical methods. Nuclear Instruments & Methods in Physics Research Section B-Beam Interactions whit Materials and Atoms 109: 519-525.